Similar HOG based on pairwise relations to

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0804102 with 2 members (alpha-ketoglutarate-dependent dioxygenase FTO)

Eukaryota / Opisthokonta / Metazoa / Eumetazoa / Bilateria / Deuterostomia / Chordata /

... /

Vertebrata / Gnathostomata / Euteleostomi / Sarcopterygii / Tetrapoda / Amniota / Sauria / Lepidosauria / Episquamata / Toxicofera /

Iguania

Completeness score: 1.00

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This HOG has 20 similar HOGs:

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Rank	HOG ID	Shared orthologs	HOG size	Description
1	HOG:E0804102	126	176	alpha-ketoglutarate-dependent dioxygenase FTO
2	HOG:E0804102.6a	106	64	alpha-ketoglutarate-dependent dioxygenase FTO
3	HOG:E0804102.2b	60	35	alpha-ketoglutarate-dependent dioxygenase FTO
4	HOG:E0804102.6a.4a	14	7	alpha-ketoglutarate-dependent dioxygenase FTO
5	HOG:E0804102.6a.3b	4	2	alpha-ketoglutarate-dependent dioxygenase FTO
6	HOG:E0804102.2b.1a	4	2	alpha-ketoglutarate-dependent dioxygenase FTO
7	HOG:E0804102.6b	2	1	alpha-ketoglutarate-dependent dioxygenase FTO
8	HOG:E0804102.5b	2	1	alpha-ketoglutarate-dependent dioxygenase FTO
9	HOG:E0804102.5a	2	1	alpha-ketoglutarate-dependent dioxygenase FTO
10	HOG:E0804102.4b	2	1	alpha-ketoglutarate-dependent dioxygenase FTO
11	HOG:E0804102.4a	2	1	alpha-ketoglutarate-dependent dioxygenase FTO
12	HOG:E0804102.3b	2	1	alpha-ketoglutarate-dependent dioxygenase FTO
13	HOG:E0804102.3a	2	1	alpha-ketoglutarate-dependent dioxygenase FTO
14	HOG:E0804102.2b.2a	2	1	alpha-ketoglutarate-dependent dioxygenase FTO
15	HOG:E0804102.2b.1b	2	1	alpha-ketoglutarate-dependent dioxygenase FTO
16	HOG:E0804102.2a	2	1	alpha-ketoglutarate-dependent dioxygenase FTO
17	HOG:E0804102.1b	2	1	alpha-ketoglutarate-dependent dioxygenase FTO
18	HOG:E0804102.1a	2	1	alpha-ketoglutarate-dependent dioxygenase FTO
19	HOG:E0068957	2	2	Alpha-ketoglutarate-dependent dioxygenase FTO
20	HOG:E0804102.2b.2b	1	1	alpha-ketoglutarate-dependent dioxygenase FTO

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